Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CHISP_0128 | CHISP_2719 | Peptidyl-tRNA hydrolase. | Transcriptional regulator, TetR family. | 0.594 |
CHISP_0128 | CHISP_2793 | Peptidyl-tRNA hydrolase. | Transcriptional regulator, TetR family. | 0.594 |
CHISP_0941 | CHISP_0942 | ABC transporter. | ABC transporter permease. | 0.982 |
CHISP_0941 | CHISP_2719 | ABC transporter. | Transcriptional regulator, TetR family. | 0.645 |
CHISP_0941 | CHISP_2720 | ABC transporter. | ABC transporter ATP-binding protein. | 0.453 |
CHISP_0941 | CHISP_2721 | ABC transporter. | ABC transporter, permease protein. | 0.453 |
CHISP_0941 | CHISP_2793 | ABC transporter. | Transcriptional regulator, TetR family. | 0.572 |
CHISP_0942 | CHISP_0941 | ABC transporter permease. | ABC transporter. | 0.982 |
CHISP_0942 | CHISP_2719 | ABC transporter permease. | Transcriptional regulator, TetR family. | 0.689 |
CHISP_0942 | CHISP_2720 | ABC transporter permease. | ABC transporter ATP-binding protein. | 0.472 |
CHISP_0942 | CHISP_2721 | ABC transporter permease. | ABC transporter, permease protein. | 0.472 |
CHISP_0942 | CHISP_2793 | ABC transporter permease. | Transcriptional regulator, TetR family. | 0.609 |
CHISP_1148 | CHISP_1606 | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII. | Bifunctional acetaldehyde/alcohol dehydrogenase. | 0.860 |
CHISP_1148 | CHISP_1765 | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII. | Pyruvate kinase. | 0.775 |
CHISP_1148 | CHISP_2719 | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII. | Transcriptional regulator, TetR family. | 0.509 |
CHISP_1148 | CHISP_2793 | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII. | Transcriptional regulator, TetR family. | 0.509 |
CHISP_1606 | CHISP_1148 | Bifunctional acetaldehyde/alcohol dehydrogenase. | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII. | 0.860 |
CHISP_1606 | CHISP_1765 | Bifunctional acetaldehyde/alcohol dehydrogenase. | Pyruvate kinase. | 0.748 |
CHISP_1606 | CHISP_2719 | Bifunctional acetaldehyde/alcohol dehydrogenase. | Transcriptional regulator, TetR family. | 0.530 |
CHISP_1606 | CHISP_2720 | Bifunctional acetaldehyde/alcohol dehydrogenase. | ABC transporter ATP-binding protein. | 0.475 |
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