STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2719Transcriptional regulator, TetR family. (198 aa)    
Predicted Functional Partners:
CHISP_2720
ABC transporter ATP-binding protein.
     
 0.775
CHISP_2721
ABC transporter, permease protein.
     
 0.775
CHISP_0942
ABC transporter permease.
  
     0.689
CHISP_0941
ABC transporter.
 
     0.645
CHISP_0128
Peptidyl-tRNA hydrolase.
   
    0.594
CHISP_1606
Bifunctional acetaldehyde/alcohol dehydrogenase.
     
 0.530
CHISP_2793
Transcriptional regulator, TetR family.
  
     0.529
CHISP_3637
Putative membrane protein.
  
  
 0.516
CHISP_1765
Pyruvate kinase.
    
 0.510
CHISP_1148
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII.
    
 0.509
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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