STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2736Hypothetical protein. (318 aa)    
Predicted Functional Partners:
CHISP_2735
Deoxyribodipyrimidine photolyase, type II.
 
  
 0.925
CHISP_1397
Thioredoxin reductase.
   
   0.690
CHISP_0643
Deoxyguanosinetriphosphate triphosphohydrolase.
    
  0.536
CHISP_2057
Deoxyguanosinetriphosphate triphosphohydrolase.
    
  0.536
CHISP_3570
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
 
     0.510
CHISP_1907
Hypothetical protein.
   
    0.503
CHISP_2832
SpoVR-like protein.
   
    0.459
CHISP_0660
2-dehydro-3-deoxygluconate kinase.
    
  0.425
CHISP_0874
Ribokinase.
    
  0.425
CHISP_2737
Trehalose synthase.
       0.420
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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