STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2737Trehalose synthase. (1115 aa)    
Predicted Functional Partners:
CHISP_3327
Glycogen debranching enzyme.
 
 
 0.970
CHISP_0785
Trehalose synthase.
 
0.959
CHISP_2738
4-alpha-glucanotransferase (amylomaltase).
  
 
 0.945
CHISP_0731
Glycogen synthase.
 
 
 0.942
CHISP_0857
Glycogen synthase.
  
 
 0.942
CHISP_2006
Glycogen synthase.
 
 
 0.942
CHISP_2817
Alpha-amylase.
 
 0.940
CHISP_3581
Amino acid permease.
   
 0.940
CHISP_3325
Malto-oligosyltrehalose synthase.
 
 
 0.939
CHISP_3326
Malto-oligosyltrehalose trehalohydrolase.
 
 
0.937
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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