STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2782Isocitrate dehydrogenase [NADP]. (400 aa)    
Predicted Functional Partners:
CHISP_2592
Aconitate hydratase.
 
 0.966
CHISP_0171
3-isopropylmalate dehydrogenase.
 
0.934
CHISP_2830
Iron-sulfur cluster-binding protein.
   
 
 0.924
CHISP_0220
Succinate dehydrogenase flavoprotein subunit.
  
 
 0.884
CHISP_1275
Citrate synthase.
  
 
 0.877
CHISP_2496
Citrate synthase.
  
 
 0.877
CHISP_0221
Succinate dehydrogenase iron-sulfur protein.
  
 
 0.873
CHISP_3392
Glutamate synthase [NADPH] large chain.
    
 0.864
CHISP_0411
Pyruvate:ferredoxin oxidoreductase.
  
 
 0.854
CHISP_1148
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII.
   
 
 0.844
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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