STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2835Phospho-2-dehydro-3-deoxyheptonate aldolase. (342 aa)    
Predicted Functional Partners:
CHISP_1900
Shikimate kinase I.
  
 
 0.800
CHISP_1292
3-dehydroquinate synthase.
    
 0.756
CHISP_1400
Prephenate dehydratase.
  
 
 0.649
CHISP_1901
Chorismate synthase.
    
 0.644
CHISP_1294
Shikimate 5-dehydrogenase.
    
 0.634
CHISP_2485
3-deoxy-7-phosphoheptulonate synthase.
    
 0.629
CHISP_2175
Anthranilate synthase, amidotransferase component.
    
 0.618
CHISP_1979
Para-aminobenzoate synthase, aminase component.
   
 
 0.610
CHISP_1190
Transketolase.
     
 0.603
CHISP_2478
Histidinol-phosphate aminotransferase.
    
 0.591
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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