STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2838Thiamine biosynthesis protein ThiH. (499 aa)    
Predicted Functional Partners:
CHISP_2839
Fe-only hydrogenase maturation protein HydF.
   
 0.977
CHISP_3372
Thiamine biosynthesis protein ThiG.
 
 0.967
CHISP_2840
Hypothetical protein.
 
     0.919
CHISP_2841
Fe-only hydrogenase, catalytic subunit HydA.
 
   
 0.888
CHISP_2847
Anti-sigma B factor RsbT.
  
    0.868
CHISP_0350
Thiamine biosynthesis protein ThiC.
 
  
 0.853
CHISP_1861
Flagellar basal-body rod protein FlgB.
   
    0.831
CHISP_2836
Fe-only hydrogenase maturation protein HydE.
 
   
0.828
CHISP_2521
Multi-sensor hybrid histidine kinase.
  
  
 0.814
CHISP_0059
Thiamine biosynthesis protein ThiS.
  
 
  0.807
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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