STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2887Peptidase, M23/M37 family. (308 aa)    
Predicted Functional Partners:
CHISP_2888
Hypothetical protein.
       0.781
CHISP_2463
Flagellar motor switch protein FliN.
    
   0.757
CHISP_0165
Multimodular transpeptidase-transglycosylase.
  
   
 0.623
CHISP_0650
D-alanine--D-alanine ligase.
 
  
 0.570
CHISP_0366
Membrane-bound lytic murein transglycosylase D precursor.
 
 
 0.541
CHISP_2889
DNA polymerase II.
       0.522
CHISP_0267
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase.
 
  
 0.517
CHISP_0620
Cell division protein FtsX.
 
  
 0.516
CHISP_0266
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase.
 
  
 0.515
CHISP_1910
5'-nucleotidase.
  
 
 0.513
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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