Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CHISP_0077 | CHISP_0479 | Hypothetical protein. | Long-chain-fatty-acid--CoA ligase. | 0.909 |
CHISP_0077 | CHISP_1053 | Hypothetical protein. | Long-chain-fatty-acid--CoA ligase. | 0.909 |
CHISP_0077 | CHISP_1707 | Hypothetical protein. | Multi-domain non-ribosomal peptide synthetase. | 0.666 |
CHISP_0077 | CHISP_1710 | Hypothetical protein. | Non-ribosomal peptide synthetase. | 0.442 |
CHISP_0077 | CHISP_2325 | Hypothetical protein. | UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase. | 0.630 |
CHISP_0077 | CHISP_2899 | Hypothetical protein. | Alcohol acetyltransferase. | 0.532 |
CHISP_0479 | CHISP_0077 | Long-chain-fatty-acid--CoA ligase. | Hypothetical protein. | 0.909 |
CHISP_0479 | CHISP_0729 | Long-chain-fatty-acid--CoA ligase. | CoA-disulfide reductase. | 0.852 |
CHISP_0479 | CHISP_1707 | Long-chain-fatty-acid--CoA ligase. | Multi-domain non-ribosomal peptide synthetase. | 0.988 |
CHISP_0479 | CHISP_1710 | Long-chain-fatty-acid--CoA ligase. | Non-ribosomal peptide synthetase. | 0.988 |
CHISP_0479 | CHISP_2444 | Long-chain-fatty-acid--CoA ligase. | 6-hexanolactone hydrolase. | 0.862 |
CHISP_0479 | CHISP_2899 | Long-chain-fatty-acid--CoA ligase. | Alcohol acetyltransferase. | 0.524 |
CHISP_0555 | CHISP_0729 | Rhs family protein. | CoA-disulfide reductase. | 0.751 |
CHISP_0555 | CHISP_1707 | Rhs family protein. | Multi-domain non-ribosomal peptide synthetase. | 0.864 |
CHISP_0555 | CHISP_1710 | Rhs family protein. | Non-ribosomal peptide synthetase. | 0.829 |
CHISP_0555 | CHISP_2899 | Rhs family protein. | Alcohol acetyltransferase. | 0.510 |
CHISP_0729 | CHISP_0479 | CoA-disulfide reductase. | Long-chain-fatty-acid--CoA ligase. | 0.852 |
CHISP_0729 | CHISP_0555 | CoA-disulfide reductase. | Rhs family protein. | 0.751 |
CHISP_0729 | CHISP_1053 | CoA-disulfide reductase. | Long-chain-fatty-acid--CoA ligase. | 0.832 |
CHISP_0729 | CHISP_1707 | CoA-disulfide reductase. | Multi-domain non-ribosomal peptide synthetase. | 0.573 |
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