STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_2926Alanine racemase. (395 aa)    
Predicted Functional Partners:
CHISP_0267
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase.
  
 0.981
CHISP_0650
D-alanine--D-alanine ligase.
 
  
 0.888
CHISP_1572
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA.
 
 
 0.878
CHISP_1710
Non-ribosomal peptide synthetase.
    
 0.826
CHISP_2226
UDP-N-acetylenolpyruvoylglucosamine reductase.
 
  
 0.823
CHISP_0266
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase.
  
 0.820
CHISP_1707
Multi-domain non-ribosomal peptide synthetase.
  
 
 0.812
CHISP_2246
UDP-N-acetylmuramate--alanine ligase.
 
  
 0.773
CHISP_2925
Phosphoribosyl-AMP cyclohydrolase.
       0.773
CHISP_0271
UDP-N-acetylmuramate--alanine ligase.
 
  
 0.756
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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