STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_3120Malto-oligosyl trehalose synthase. (931 aa)    
Predicted Functional Partners:
CHISP_3326
Malto-oligosyltrehalose trehalohydrolase.
 
 0.991
CHISP_3327
Glycogen debranching enzyme.
 
 0.979
CHISP_1614
4-alpha-glucanotransferase (amylomaltase).
 
 
 0.964
CHISP_2738
4-alpha-glucanotransferase (amylomaltase).
 
 
 0.964
CHISP_2011
4-alpha-glucanotransferase (amylomaltase).
 
 
 0.958
CHISP_0785
Trehalose synthase.
 
 
 0.938
CHISP_2737
Trehalose synthase.
 
 
 0.935
CHISP_2008
Glycogen branching enzyme.
  
 
 0.818
CHISP_0345
Alpha-amylase.
  
  0.757
CHISP_0047
Glucose-1-phosphate adenylyltransferase.
    
 0.636
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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