STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_3185Signal recognition particle protein. (444 aa)    
Predicted Functional Partners:
CHISP_3186
30S ribosomal protein S16p.
 
 
 0.972
CHISP_2085
Signal recognition particle receptor FtsY.
 
0.961
CHISP_1652
Preprotein translocase secY subunit.
    
 0.928
CHISP_1620
Hypothetical protein.
   
 0.925
CHISP_1649
30S ribosomal protein S5p (S2e).
  
 
 0.923
CHISP_3189
50S ribosomal protein L19p.
   
 
 0.922
CHISP_0210
Preprotein translocase, SecG subunit.
    
 0.914
CHISP_1633
50S ribosomal protein L4p (L1e).
  
 0.894
CHISP_1388
30S ribosomal protein S2p (SAe).
  
 0.893
CHISP_1651
50S ribosomal protein L15p (L27Ae).
   
 
 0.890
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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