STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_3363Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA. (594 aa)    
Predicted Functional Partners:
CHISP_3362
Oligopeptide transport system permease protein OppB.
 0.990
CHISP_3361
Oligopeptide transport system permease protein OppC.
 0.984
CHISP_0844
Oligopeptide ABC transporter, permease protein OppB.
 
 0.974
CHISP_0843
Oligopeptide ABC transporter, permease protein 2.
 0.970
CHISP_2919
Oligopeptide transport ATP-binding protein OppD.
 
 0.946
CHISP_2920
Oligopeptide transport ATP-binding protein OppF.
 
 0.943
CHISP_0842
Oligopeptide ABC transporter, ATP-binding protein OppD.
 
 
 0.923
CHISP_0841
Oligopeptide ABC transporter, ATP-binding protein.
 
 0.893
CHISP_0411
Pyruvate:ferredoxin oxidoreductase.
  
  
 0.833
CHISP_3301
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS.
  
  
 0.783
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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