STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_3456Cobinamide adenolsyltransferase. (171 aa)    
Predicted Functional Partners:
CHISP_3452
Cobyric acid synthase.
  
 0.995
CHISP_3458
Adenosylcobinamide-phosphate guanylyltransferase.
 
  
 0.963
CHISP_3453
Adenosylcobinamide-phosphate synthase.
 
  
 0.954
CHISP_3450
Iron(III) dicitrate transport ATP-binding protein FecE.
   
  0.914
CHISP_2634
Cobalamin synthase.
 
 
 0.846
CHISP_3457
Xylose isomerase.
       0.786
CHISP_3460
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase.
 
   
 0.764
CHISP_0312
CobN/magnesium chelatase family protein.
  
 0.751
CHISP_3451
Iron(III) dicitrate transport system permease protein FecD.
     
 0.720
CHISP_3455
Hypothetical protein.
       0.716
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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