STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_3516Hypothetical protein. (191 aa)    
Predicted Functional Partners:
CHISP_1033
Ribonucleotide-diphosphate reductase subunit alpha.
   
 0.996
CHISP_1422
Holliday junction resolvase-like protein.
  
  
 0.838
CHISP_1318
DNA polymerase III beta subunit.
   
 
 0.795
CHISP_0666
ATP-dependent helicase HepA.
   
 0.713
CHISP_2365
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
   
  
 0.695
CHISP_0149
ATP-dependent RNA helicase RhlB.
   
  0.672
CHISP_0574
ATP-dependent RNA helicase RhlE.
   
  0.672
CHISP_2512
DEAD-box ATP-dependent RNA helicase CshA.
   
  0.672
CHISP_3689
ATP-dependent RNA helicase.
   
  0.672
CHISP_1683
DNA polymerase I.
   
 0.657
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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