STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_3649Chemotaxis protein CheW. (160 aa)    
Predicted Functional Partners:
CHISP_2802
Signal transduction histidine kinase CheA.
 
 0.991
CHISP_0198
Signal transduction histidine kinase CheA.
 
 0.986
CHISP_1130
Signal transduction histidine kinase CheA.
  
 0.983
CHISP_2463
Flagellar motor switch protein FliN.
  
 
 0.955
CHISP_3648
Chemotaxis protein CheR.
 
 
 0.953
CHISP_2528
Methyl-accepting chemotaxis protein II.
 
 0.952
CHISP_2535
Methyl-accepting chemotaxis protein I.
 
 0.951
CHISP_2541
Signal transduction histidine kinase CheA.
 
 0.943
CHISP_2531
Signal transduction histidine kinase CheA.
 
 0.942
CHISP_0011
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
  
 0.939
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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