STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (288 aa)    
Predicted Functional Partners:
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
  
  
 0.877
E7GC73_9FIRM
Pyruvate-flavodoxin oxidoreductase.
    
 0.846
E7GCU5_9FIRM
Uncharacterized protein.
       0.737
E7GC32_9FIRM
Uncharacterized protein; Belongs to the 'phage' integrase family.
  
  
 0.684
E7GC31_9FIRM
Uncharacterized protein; Belongs to the 'phage' integrase family.
  
  
 0.683
E7GCQ3_9FIRM
DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.566
E7GG71_9FIRM
SOS response-associated protein; Belongs to the SOS response-associated peptidase family.
   
  
 0.563
E7GDH9_9FIRM
Prephenate dehydrogenase.
  
    0.561
whiA
Probable cell division protein WhiA; Involved in cell division and chromosome segregation.
   
  
 0.560
E7G6C1_9FIRM
Uncharacterized protein.
   
    0.553
Your Current Organism:
Coprobacillus cateniformis
NCBI taxonomy Id: 100884
Other names: C. cateniformis, CIP 106690, Coprobacillus catenaformis, Coprobacillus cateniformis corrig. Kageyama and Benno 2000, Coprobacillus sp. 29_1, Coprobacillus sp. D6, JCM 10604, strain RCA1-24
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