Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
E7GBK8_9FIRM | E7GDC2_9FIRM | GCA_000269565_02259 | GCA_000269565_00418 | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | Uracil permease. | 0.669 |
E7GBK8_9FIRM | E7GDV8_9FIRM | GCA_000269565_02259 | GCA_000269565_02595 | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | FAD-binding FR-type domain-containing protein. | 0.856 |
E7GBK8_9FIRM | carA | GCA_000269565_02259 | GCA_000269565_02269 | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.999 |
E7GBK8_9FIRM | carB | GCA_000269565_02259 | GCA_000269565_02270 | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | Carbamoyl-phosphate synthase large chain. | 0.906 |
E7GBK8_9FIRM | pyrB | GCA_000269565_02259 | GCA_000269565_00343 | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.997 |
E7GBK8_9FIRM | pyrC | GCA_000269565_02259 | GCA_000269565_00342 | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.981 |
E7GBK8_9FIRM | pyrD | GCA_000269565_02259 | GCA_000269565_00340 | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. | 0.916 |
E7GBK8_9FIRM | pyrE | GCA_000269565_02259 | GCA_000269565_00964 | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.768 |
E7GBK8_9FIRM | pyrF | GCA_000269565_02259 | GCA_000269565_00965 | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.740 |
E7GBK8_9FIRM | pyrK | GCA_000269565_02259 | GCA_000269565_00341 | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.896 |
E7GDC2_9FIRM | E7GBK8_9FIRM | GCA_000269565_00418 | GCA_000269565_02259 | Uracil permease. | Carbamoyl-phosphate synthase (glutamine-hydrolyzing); Belongs to the CarB family. | 0.669 |
E7GDC2_9FIRM | E7GDV8_9FIRM | GCA_000269565_00418 | GCA_000269565_02595 | Uracil permease. | FAD-binding FR-type domain-containing protein. | 0.612 |
E7GDC2_9FIRM | carA | GCA_000269565_00418 | GCA_000269565_02269 | Uracil permease. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.891 |
E7GDC2_9FIRM | carB | GCA_000269565_00418 | GCA_000269565_02270 | Uracil permease. | Carbamoyl-phosphate synthase large chain. | 0.669 |
E7GDC2_9FIRM | pyrB | GCA_000269565_00418 | GCA_000269565_00343 | Uracil permease. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.948 |
E7GDC2_9FIRM | pyrC | GCA_000269565_00418 | GCA_000269565_00342 | Uracil permease. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.914 |
E7GDC2_9FIRM | pyrD | GCA_000269565_00418 | GCA_000269565_00340 | Uracil permease. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. | 0.878 |
E7GDC2_9FIRM | pyrE | GCA_000269565_00418 | GCA_000269565_00964 | Uracil permease. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.903 |
E7GDC2_9FIRM | pyrF | GCA_000269565_00418 | GCA_000269565_00965 | Uracil permease. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.904 |
E7GDC2_9FIRM | pyrK | GCA_000269565_00418 | GCA_000269565_00341 | Uracil permease. | Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.754 |
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