Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
E7G7I9_9FIRM | E7G7N1_9FIRM | GCA_000269565_01003 | GCA_000269565_00934 | Uncharacterized protein. | Uncharacterized protein. | 0.728 |
E7G7I9_9FIRM | E7GFJ1_9FIRM | GCA_000269565_01003 | GCA_000269565_00579 | Uncharacterized protein. | UPF0122 protein HMPREF9488_03534; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.729 |
E7G7I9_9FIRM | mrnC | GCA_000269565_01003 | GCA_000269565_02639 | Uncharacterized protein. | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.659 |
E7G7I9_9FIRM | rnmV | GCA_000269565_01003 | GCA_000269565_01944 | Uncharacterized protein. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.656 |
E7G7I9_9FIRM | whiA | GCA_000269565_01003 | GCA_000269565_02535 | Uncharacterized protein. | Probable cell division protein WhiA; Involved in cell division and chromosome segregation. | 0.706 |
E7G7N1_9FIRM | E7G7I9_9FIRM | GCA_000269565_00934 | GCA_000269565_01003 | Uncharacterized protein. | Uncharacterized protein. | 0.728 |
E7G7N1_9FIRM | E7GFJ1_9FIRM | GCA_000269565_00934 | GCA_000269565_00579 | Uncharacterized protein. | UPF0122 protein HMPREF9488_03534; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.768 |
E7G7N1_9FIRM | mrnC | GCA_000269565_00934 | GCA_000269565_02639 | Uncharacterized protein. | Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.695 |
E7G7N1_9FIRM | whiA | GCA_000269565_00934 | GCA_000269565_02535 | Uncharacterized protein. | Probable cell division protein WhiA; Involved in cell division and chromosome segregation. | 0.707 |
E7GFI7_9FIRM | E7GFI8_9FIRM | GCA_000269565_00583 | GCA_000269565_00582 | Two-component system response regulator. | Sensor protein. | 0.994 |
E7GFI7_9FIRM | E7GFJ1_9FIRM | GCA_000269565_00583 | GCA_000269565_00579 | Two-component system response regulator. | UPF0122 protein HMPREF9488_03534; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.731 |
E7GFI7_9FIRM | ffh | GCA_000269565_00583 | GCA_000269565_00578 | Two-component system response regulator. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.740 |
E7GFI7_9FIRM | ftsY | GCA_000269565_00583 | GCA_000269565_00580 | Two-component system response regulator. | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.731 |
E7GFI7_9FIRM | smc | GCA_000269565_00583 | GCA_000269565_00581 | Two-component system response regulator. | Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.777 |
E7GFI8_9FIRM | E7GFI7_9FIRM | GCA_000269565_00582 | GCA_000269565_00583 | Sensor protein. | Two-component system response regulator. | 0.994 |
E7GFI8_9FIRM | E7GFJ1_9FIRM | GCA_000269565_00582 | GCA_000269565_00579 | Sensor protein. | UPF0122 protein HMPREF9488_03534; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.735 |
E7GFI8_9FIRM | ffh | GCA_000269565_00582 | GCA_000269565_00578 | Sensor protein. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.754 |
E7GFI8_9FIRM | ftsY | GCA_000269565_00582 | GCA_000269565_00580 | Sensor protein. | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.761 |
E7GFI8_9FIRM | smc | GCA_000269565_00582 | GCA_000269565_00581 | Sensor protein. | Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.851 |
E7GFJ1_9FIRM | E7G7I9_9FIRM | GCA_000269565_00579 | GCA_000269565_01003 | UPF0122 protein HMPREF9488_03534; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Uncharacterized protein. | 0.729 |
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