E7GAH4_9FIRM protein (Coprobacillus cateniformis)

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second shell of interactors

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

E7GAH4_9FIRM

Conjugative transposon protein. (127 aa)

Predicted Functional Partners:

E7GAH3_9FIRM

0.950

E7G6V7_9FIRM

0.895

E7GAH6_9FIRM

0.889

E7G6W4_9FIRM

0.883

E7GFZ3_9FIRM

0.872

E7G6W6_9FIRM

0.865

GCA_000269565_01870

0.861

E7G9S1_9FIRM

0.839

E7G6V2_9FIRM

0.829

E7G6V6_9FIRM

0.828

Your Current Organism:

Coprobacillus cateniformis

NCBI taxonomy Id: 100884
Other names: C. cateniformis, CIP 106690, Coprobacillus catenaformis, Coprobacillus cateniformis corrig. Kageyama and Benno 2000, Coprobacillus sp. 29_1, Coprobacillus sp. D6, JCM 10604, strain RCA1-24

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E7G6V2_9FIRM	E7G6V6_9FIRM	GCA_000269565_01223	GCA_000269565_01219	Conjugative transposon protein.	FtsK/SpoIIIE family protein.	0.869
E7G6V2_9FIRM	E7G6V7_9FIRM	GCA_000269565_01223	GCA_000269565_01218	Conjugative transposon protein.	Cro/CI family Transcriptional regulator.	0.837
E7G6V2_9FIRM	E7G6W4_9FIRM	GCA_000269565_01223	GCA_000269565_01210	Conjugative transposon protein.	Conjugative transposon protein.	0.816
E7G6V2_9FIRM	E7G6W6_9FIRM	GCA_000269565_01223	GCA_000269565_01208	Conjugative transposon protein.	NLP/P60 family protein.	0.798
E7G6V2_9FIRM	E7G9S1_9FIRM	GCA_000269565_01223	GCA_000269565_03355	Conjugative transposon protein.	Cro/CI family Transcriptional regulator.	0.713
E7G6V2_9FIRM	E7GAH4_9FIRM	GCA_000269565_01223	GCA_000269565_01866	Conjugative transposon protein.	Conjugative transposon protein.	0.829
E7G6V2_9FIRM	E7GAH6_9FIRM	GCA_000269565_01223	GCA_000269565_01868	Conjugative transposon protein.	FtsK/SpoIIIE family protein.	0.797
E7G6V2_9FIRM	E7GFZ3_9FIRM	GCA_000269565_01223	GCA_000269565_02723	Conjugative transposon protein.	Cro/CI family Transcriptional regulator.	0.755
E7G6V2_9FIRM	GCA_000269565_01870	GCA_000269565_01223	GCA_000269565_01870	Conjugative transposon protein.	annotation not available	0.691
E7G6V6_9FIRM	E7G6V2_9FIRM	GCA_000269565_01219	GCA_000269565_01223	FtsK/SpoIIIE family protein.	Conjugative transposon protein.	0.869
E7G6V6_9FIRM	E7G6V7_9FIRM	GCA_000269565_01219	GCA_000269565_01218	FtsK/SpoIIIE family protein.	Cro/CI family Transcriptional regulator.	0.926
E7G6V6_9FIRM	E7G6W4_9FIRM	GCA_000269565_01219	GCA_000269565_01210	FtsK/SpoIIIE family protein.	Conjugative transposon protein.	0.888
E7G6V6_9FIRM	E7G6W6_9FIRM	GCA_000269565_01219	GCA_000269565_01208	FtsK/SpoIIIE family protein.	NLP/P60 family protein.	0.841
E7G6V6_9FIRM	E7G9S1_9FIRM	GCA_000269565_01219	GCA_000269565_03355	FtsK/SpoIIIE family protein.	Cro/CI family Transcriptional regulator.	0.846
E7G6V6_9FIRM	E7GAH3_9FIRM	GCA_000269565_01219	GCA_000269565_01865	FtsK/SpoIIIE family protein.	Conjugative transposon protein.	0.797
E7G6V6_9FIRM	E7GAH4_9FIRM	GCA_000269565_01219	GCA_000269565_01866	FtsK/SpoIIIE family protein.	Conjugative transposon protein.	0.828
E7G6V6_9FIRM	E7GFZ3_9FIRM	GCA_000269565_01219	GCA_000269565_02723	FtsK/SpoIIIE family protein.	Cro/CI family Transcriptional regulator.	0.852
E7G6V6_9FIRM	GCA_000269565_01870	GCA_000269565_01219	GCA_000269565_01870	FtsK/SpoIIIE family protein.	annotation not available	0.836
E7G6V7_9FIRM	E7G6V2_9FIRM	GCA_000269565_01218	GCA_000269565_01223	Cro/CI family Transcriptional regulator.	Conjugative transposon protein.	0.837
E7G6V7_9FIRM	E7G6V6_9FIRM	GCA_000269565_01218	GCA_000269565_01219	Cro/CI family Transcriptional regulator.	FtsK/SpoIIIE family protein.	0.926

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Network Stats

number of nodes:

7

number of edges:

12

average node degree:

3.43

avg. local clustering coefficient:

0.795

expected number of edges:

6

PPI enrichment p-value:

0.0245

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046933

Proton-transporting ATP synthase activity, rotational mechanism

11 of 17

2.59

11.22

6.40e-25

GO:0046961

Proton-transporting ATPase activity, rotational mechanism

2 of 5

2.38

1.38

0.0028

GO:0005524

ATP binding

5 of 481

0.8

0.49

0.0253

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0045259

Proton-transporting ATP synthase complex

11 of 17

2.59

11.48

1.35e-25

GO:0045261

Proton-transporting ATP synthase complex, catalytic core F(1)

6 of 10

2.56

6.26

3.31e-13

GO:0045263

Proton-transporting ATP synthase complex, coupling factor F(o)

5 of 7

2.63

5.43

3.04e-11

GO:0031676

Plasma membrane-derived thylakoid membrane

11 of 123

1.73

4.67

8.61e-18

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1123

Proton channel activity

11 of 18

2.57

10.94

1.75e-24

CL:1125

ATP synthesis

10 of 13

2.67

10.51

1.91e-22

CL:1126

ATP synthesis

6 of 7

2.71

6.17

1.31e-12

CL:1139

ATP synthesis

4 of 6

2.6

3.61

1.46e-07

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00195

Photosynthesis

11 of 80

1.92

5.98

2.32e-19

map00190

Oxidative phosphorylation

11 of 88

1.88

5.72

3.09e-19

map01100

Metabolic pathways

11 of 2083

0.5

0.43

0.00014

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0045259

Proton-transporting ATP synthase complex

11 of 18

2.57

11.19

3.96e-25

GOCC:0045261

Proton-transporting ATP synthase complex, catalytic core F(1)

6 of 10

2.56

5.87

2.41e-12

GOCC:0045263

Proton-transporting ATP synthase complex, coupling factor F(o)

5 of 8

2.58

4.92

2.85e-10

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0066

ATP synthesis

11 of 16

2.62

11.63

1.10e-25

KW-0375

Hydrogen ion transport

11 of 19

2.54

11.16

2.29e-25

KW-0139

CF(1)

6 of 9

2.6

6.16

7.38e-13

KW-0138

CF(0)

5 of 7

2.63

5.17

1.10e-10

KW-0793

Thylakoid

11 of 108

1.79

5.07

2.21e-18

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00430

ATP synthase B/B CF(0)

3 of 3

2.78

2.32

5.65e-05

PF00231

ATP synthase

2 of 2

2.78

1.22

0.0062

PF02874

ATP synthase alpha/beta family, beta-barrel domain

2 of 4

2.48

1.08

0.0104

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