Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
E7G9M6_9FIRM | E7GAE1_9FIRM | GCA_000269565_03312 | GCA_000269565_03573 | Competence/damage inducible protein cinA. | Competence/damage inducible protein; Belongs to the CinA family. | 0.991 |
E7G9M6_9FIRM | E7GB40_9FIRM | GCA_000269565_03312 | GCA_000269565_02075 | Competence/damage inducible protein cinA. | Prophage Lp1 protein 65. | 0.467 |
E7G9M6_9FIRM | E7GDL7_9FIRM | GCA_000269565_03312 | GCA_000269565_00523 | Competence/damage inducible protein cinA. | Lactamase_B domain-containing protein. | 0.634 |
E7G9M6_9FIRM | recA | GCA_000269565_03312 | GCA_000269565_03574 | Competence/damage inducible protein cinA. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.746 |
E7GAE1_9FIRM | E7G9M6_9FIRM | GCA_000269565_03573 | GCA_000269565_03312 | Competence/damage inducible protein; Belongs to the CinA family. | Competence/damage inducible protein cinA. | 0.991 |
E7GAE1_9FIRM | E7GB40_9FIRM | GCA_000269565_03573 | GCA_000269565_02075 | Competence/damage inducible protein; Belongs to the CinA family. | Prophage Lp1 protein 65. | 0.467 |
E7GAE1_9FIRM | E7GDL7_9FIRM | GCA_000269565_03573 | GCA_000269565_00523 | Competence/damage inducible protein; Belongs to the CinA family. | Lactamase_B domain-containing protein. | 0.634 |
E7GAE1_9FIRM | recA | GCA_000269565_03573 | GCA_000269565_03574 | Competence/damage inducible protein; Belongs to the CinA family. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.905 |
E7GB39_9FIRM | E7GB40_9FIRM | GCA_000269565_02074 | GCA_000269565_02075 | Uncharacterized protein. | Prophage Lp1 protein 65. | 0.791 |
E7GB40_9FIRM | E7G9M6_9FIRM | GCA_000269565_02075 | GCA_000269565_03312 | Prophage Lp1 protein 65. | Competence/damage inducible protein cinA. | 0.467 |
E7GB40_9FIRM | E7GAE1_9FIRM | GCA_000269565_02075 | GCA_000269565_03573 | Prophage Lp1 protein 65. | Competence/damage inducible protein; Belongs to the CinA family. | 0.467 |
E7GB40_9FIRM | E7GB39_9FIRM | GCA_000269565_02075 | GCA_000269565_02074 | Prophage Lp1 protein 65. | Uncharacterized protein. | 0.791 |
E7GB40_9FIRM | E7GCA4_9FIRM | GCA_000269565_02075 | GCA_000269565_00046 | Prophage Lp1 protein 65. | Uncharacterized protein. | 0.602 |
E7GB40_9FIRM | E7GDL7_9FIRM | GCA_000269565_02075 | GCA_000269565_00523 | Prophage Lp1 protein 65. | Lactamase_B domain-containing protein. | 0.498 |
E7GB40_9FIRM | E7GE42_9FIRM | GCA_000269565_02075 | GCA_000269565_02511 | Prophage Lp1 protein 65. | Cold-shock domain-containing protein. | 0.717 |
E7GB40_9FIRM | E7GE73_9FIRM | GCA_000269565_02075 | GCA_000269565_02479 | Prophage Lp1 protein 65. | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | 0.588 |
E7GB40_9FIRM | dnaA | GCA_000269565_02075 | GCA_000269565_02020 | Prophage Lp1 protein 65. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.501 |
E7GB40_9FIRM | recA | GCA_000269565_02075 | GCA_000269565_03574 | Prophage Lp1 protein 65. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.500 |
E7GB40_9FIRM | sigA | GCA_000269565_02075 | GCA_000269565_01004 | Prophage Lp1 protein 65. | RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.762 |
E7GCA4_9FIRM | E7GB40_9FIRM | GCA_000269565_00046 | GCA_000269565_02075 | Uncharacterized protein. | Prophage Lp1 protein 65. | 0.602 |
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