Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
E7G9D2_9FIRM | E7GAD9_9FIRM | GCA_000269565_03215 | GCA_000269565_03571 | Uncharacterized protein. | Uncharacterized protein. | 0.854 |
E7G9D2_9FIRM | E7GAY1_9FIRM | GCA_000269565_03215 | GCA_000269565_02017 | Uncharacterized protein. | Membrane protein. | 0.804 |
E7G9D2_9FIRM | E7GB47_9FIRM | GCA_000269565_03215 | GCA_000269565_02082 | Uncharacterized protein. | Protein-export membrane protein SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.962 |
E7G9D2_9FIRM | rplK | GCA_000269565_03215 | GCA_000269565_02645 | Uncharacterized protein. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.815 |
E7G9D2_9FIRM | rplP | GCA_000269565_03215 | GCA_000269565_02676 | Uncharacterized protein. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.835 |
E7G9D2_9FIRM | rplQ | GCA_000269565_03215 | GCA_000269565_02697 | Uncharacterized protein. | 50S ribosomal protein L17. | 0.805 |
E7G9D2_9FIRM | rplV | GCA_000269565_03215 | GCA_000269565_02674 | Uncharacterized protein. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.818 |
E7G9D2_9FIRM | rplW | GCA_000269565_03215 | GCA_000269565_02671 | Uncharacterized protein. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.847 |
E7G9D2_9FIRM | rpmC | GCA_000269565_03215 | GCA_000269565_02677 | Uncharacterized protein. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.845 |
E7G9D2_9FIRM | secY | GCA_000269565_03215 | GCA_000269565_02689 | Uncharacterized protein. | Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.963 |
E7GAD9_9FIRM | E7G9D2_9FIRM | GCA_000269565_03571 | GCA_000269565_03215 | Uncharacterized protein. | Uncharacterized protein. | 0.854 |
E7GAD9_9FIRM | rplK | GCA_000269565_03571 | GCA_000269565_02645 | Uncharacterized protein. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.800 |
E7GAD9_9FIRM | rplP | GCA_000269565_03571 | GCA_000269565_02676 | Uncharacterized protein. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.800 |
E7GAD9_9FIRM | rplQ | GCA_000269565_03571 | GCA_000269565_02697 | Uncharacterized protein. | 50S ribosomal protein L17. | 0.801 |
E7GAD9_9FIRM | rplV | GCA_000269565_03571 | GCA_000269565_02674 | Uncharacterized protein. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.854 |
E7GAD9_9FIRM | rplW | GCA_000269565_03571 | GCA_000269565_02671 | Uncharacterized protein. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.864 |
E7GAD9_9FIRM | rpmC | GCA_000269565_03571 | GCA_000269565_02677 | Uncharacterized protein. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.854 |
E7GAY1_9FIRM | E7G9D2_9FIRM | GCA_000269565_02017 | GCA_000269565_03215 | Membrane protein. | Uncharacterized protein. | 0.804 |
E7GAY1_9FIRM | E7GB47_9FIRM | GCA_000269565_02017 | GCA_000269565_02082 | Membrane protein. | Protein-export membrane protein SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.985 |
E7GAY1_9FIRM | rplK | GCA_000269565_02017 | GCA_000269565_02645 | Membrane protein. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.845 |
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