STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddx21ATP-dependent RNA helicase DDX21. (777 aa)    
Predicted Functional Partners:
Pes1
LOW QUALITY PROTEIN: pescadillo homolog.
   
 0.977
Ebna1bp2
Probable rRNA-processing protein EBP2.
   
 0.972
Gnl3
Guanine nucleotide-binding protein-like 3.
   
 0.962
Mybbp1a
Myb-binding protein 1A.
   
 0.957
Kpna2
Importin subunit alpha-1/8.
    
 
 0.957
Dhx36
ATP-dependent RNA helicase DHX36.
   
 0.942
Sf3b1
Splicing factor 3B subunit 1 isoform X1.
   
 0.935
Baz1b
Bromodomain adjacent to zinc finger domain protein 1B.
   
 
 0.929
Dek
Protein DEK.
     
 0.922
Myo1c
Unconventional myosin-Ic isoform X1.
    
  0.884
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.