STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krt19Keratin, type I cytoskeletal 19. (403 aa)    
Predicted Functional Partners:
Krt8
Keratin, type II cytoskeletal 8.
   
0.943
Dmd
Dystrophin isoform X1.
    
 0.875
Dag1
Dystroglycan 1.
     
 0.855
Utrn
Utrophin.
    
 0.790
Cav3
Caveolin 3.
     
 0.775
Gp1ba
Platelet glycoprotein Ib alpha chain.
    
  0.771
Gp1bb
Platelet glycoprotein Ib beta chain.
    
  0.771
Gp5
Platelet glycoprotein V.
    
  0.771
Pgm5
Phosphoglucomutase-like protein 5.
     
 0.770
Epcam
Epithelial cell adhesion molecule.
   
  
 0.728
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.