STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smoc1SPARC-related modular calcium-binding protein 1 isoform X1. (463 aa)    
Predicted Functional Partners:
Sfmbt2
Scm-like with four MBT domains protein 2 isoform X1.
      
 0.499
Clec3b
C-type lectin domain family 3 member B.
      
 0.461
Jade1
Protein Jade-1.
      
 0.451
Cabp7
Calcium-binding protein 7.
      
 0.450
Fkbp10
Peptidyl-prolyl cis-trans isomerase FKBP10 isoform X1.
      
 0.450
Sall1
Sal-like protein 1.
      
 0.418
Lgi2
Leucine-rich repeat LGI family member 2 isoform X1.
      
 0.408
Nap1l5
Nucleosome assembly protein 1-like 5.
      
 0.408
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.