STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smpd5Sphingomyelin phosphodiesterase 5 isoform X1. (483 aa)    
Predicted Functional Partners:
Rack1
Guanine nucleotide-binding protein subunit beta-2-like 1 protein.
    
 0.546
Wdr31
WD repeat-containing protein 31 isoform X1.
    
 0.539
Nsmaf
Factor associated with neutral sphingomyelinase activation.
     
 0.491
Smpd2
Sphingomyelin phosphodiesterase 2.
      
 0.478
Smpd4
Sphingomyelin phosphodiesterase 4 isoform X1.
      
 0.459
Tnf
Tumor necrosis factor superfamily, member 2.
    
 0.452
Tnfrsf1a
Tumor necrosis factor receptor superfamily member 1A.
     
 0.439
Smpd1
Sphingomyelin phosphodiesterase.
      
 0.418
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.