STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apobec3DNA dC->dU-editing enzyme APOBEC-3 isoform X1. (440 aa)    
Predicted Functional Partners:
Elob
Elongin-B.
   
 
 0.956
Cul5
Cullin 5.
     
 0.955
Eloc
Elongin-C.
     
 0.947
Cox5a
Cytochrome c oxidase subunit 5A, mitochondrial.
   
 0.947
LOC110287200
RING-box protein 2.
   
 0.942
Cox7c
Cytochrome c oxidase subunit 7C, mitochondrial.
   
 0.939
Cyc1
Ubiquinol-cytochrome c reductase cytochrome c1 subunit.
   
 0.928
Uqcrfs1
Cytochrome b-c1 complex subunit Rieske, mitochondrial.
   
 0.913
Uqcrb
Ubiquinol-cytochrome c reductase subunit 7.
   
 0.913
Uqcrh
Cytochrome b-c1 complex subunit 6, mitochondrial.
   
 0.903
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.