STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xrcc6X-ray repair cross-complementing protein 6. (583 aa)    
Predicted Functional Partners:
Xrcc5
X-ray repair cross-complementing protein 5.
  
 0.999
Prkdc
DNA-dependent protein kinase catalytic subunit isoform X1.
    
 0.998
Wrn
Werner syndrome ATP-dependent helicase.
   
 
 0.991
Lig4
DNA ligase 4.
   
 0.986
Nhej1
Non-homologous end-joining factor 1 isoform X1.
    
 0.985
Trp53bp1
Tumor suppressor p53-binding protein 1.
    
 0.978
Atm
Serine-protein kinase ATM.
    
 0.974
Dclre1c
LOW QUALITY PROTEIN: protein artemis.
   
 0.962
Xrcc1
DNA repair protein XRCC1 isoform X1.
    
 0.956
Paxx
Protein PAXX isoform X1.
    
 0.941
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.