STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Prr3Proline-rich protein 3 isoform X1. (189 aa)    
Predicted Functional Partners:
U2af2
Splicing factor U2AF 65 kDa subunit isoform X1.
   
 0.922
Ddx46
Probable ATP-dependent RNA helicase DDX46 isoform X1.
   
 0.897
Sf3a1
Splicing factor 3A subunit 1.
   
 0.868
MGP_CAROLIEiJ_P0024008
Splicing factor 3A subunit 2.
   
 0.856
Sf3a3
Splicing factor 3A subunit 3.
   
 0.804
Sf3b1
Splicing factor 3B subunit 1 isoform X1.
   
 0.803
Cdc5l
Cell division cycle 5-like protein.
   
 
 0.786
Snrpc
U1 small nuclear ribonucleoprotein C.
   
 0.722
Prpf39
Pre-mRNA-processing factor 39 isoform X1.
   
 0.710
Rbm25
RNA-binding protein 25 isoform X1.
   
 0.690
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.