STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoxd9Homeobox protein HoxB/C/D9. (338 aa)    
Predicted Functional Partners:
Hoxd10
Homeobox protein Hox-D10.
   
  
0.705
Hoxd3
Homeobox protein HoxA/B/D3.
   
 
0.580
Hoxd8
Homeobox protein Hox-D8 isoform X1.
   
 
0.495
Meis1
Homeobox protein Meis1 isoform X1.
    
 
 0.477
Hoxb7
Homeobox protein HoxA/B7.
   
 
0.439
Hoxb5
Homeobox protein HoxA/B/C5.
   
 
0.426
Hoxa3
Homeobox protein Hox-A3 isoform X1.
   
 
0.425
Hoxa5
Homeobox protein HoxA/B/C5.
   
 
0.408
Hoxd4
Homeobox protein HoxA/B/C/D4.
   
 
0.406
Hoxb4
Homeobox protein HoxA/B/C/D4.
   
 
0.403
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.