STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MGP_CAROLIEiJ_P0060869annotation not available (585 aa)    
Predicted Functional Partners:
Mysm1
Histone H2A deubiquitinase MYSM1.
    
 0.426
Ms4a12
Membrane-spanning 4-domains, subfamily A, member 12.
   
  
 0.423
Arid4a
AT-rich interactive domain-containing protein 4A.
    
 0.419
Arid4b
AT-rich interactive domain-containing protein 4B.
    
 0.419
Lix1
Protein limb expression 1 homolog.
   
 
  0.414
Fam20b
Glycosaminoglycan xylosylkinase.
   
 
  0.400
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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