STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rbm47RNA-binding protein 47 isoform X1. (590 aa)    
Predicted Functional Partners:
Eprs
Bifunctional glutamyl/prolyl-tRNA synthetase.
   
 0.893
Apobec2
C->U-editing enzyme APOBEC-2.
     
 0.611
Apobec4
Putative C->U-editing enzyme APOBEC-4.
     
 0.591
Apobec3
DNA dC->dU-editing enzyme APOBEC-3 isoform X1.
    
 0.567
Fau-2
Ubiquitin-like protein fubi and ribosomal protein S30.
   
   0.550
Fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
   0.550
Srsf3
Splicing factor, arginine/serine-rich 3.
   
 0.501
Tra2b
Transformer-2 protein homolog beta isoform X1.
   
 0.499
Hnrnpk
Heterogeneous nuclear ribonucleoprotein K isoform X1.
   
 0.489
MGP_CAROLIEiJ_P0052409
annotation not available
   
 0.489
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.