STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lsm8LSM8 homolog, U6 small nuclear RNA associated isoform X1. (100 aa)    
Predicted Functional Partners:
Lsm7
U6 snRNA-associated Sm-like protein LSm7.
   
 0.999
Lsm2
U6 snRNA-associated Sm-like protein LSm2 isoform X1.
   
 0.999
Lsm5
U6 snRNA-associated Sm-like protein LSm5.
   
 0.999
Lsm4
U6 snRNA-associated Sm-like protein LSm4.
   
 0.999
Lsm6
U6 snRNA-associated Sm-like protein LSm6.
   
 0.999
Prpf31
U4/U6 small nuclear ribonucleoprotein PRP31.
    
 0.991
Prpf3
U4/U6 small nuclear ribonucleoprotein PRP3.
    
 0.990
Eftud2
116 kDa U5 small nuclear ribonucleoprotein component isoform X1.
   
 0.989
BC024978
UPF0692 protein C19orf54 homolog isoform X1.
   
 0.989
Prpf4
U4/U6 small nuclear ribonucleoprotein PRP4.
   
 0.988
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.