STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab27aRas-related protein Rab-27A. (221 aa)    
Predicted Functional Partners:
Sytl2
Synaptotagmin-like protein 2 isoform X1.
   
 
 0.991
Myo5a
Unconventional myosin-Va.
    
 0.958
Sytl4
Synaptotagmin-like protein 4.
   
 
 0.907
Myrip
Rab effector MyRIP.
    
 0.906
Sytl1
Synaptotagmin-like protein 1.
   
 
 0.797
Cd63
CD63 antigen.
     
 0.796
Sytl5
Synaptotagmin-like protein 5.
   
 
 0.779
Sytl3
Synaptotagmin-like protein 3 isoform X1.
   
 
 0.761
Rph3al
Rab effector Noc2 isoform X1.
    
 
 0.760
Unc13d
Protein unc-13 homolog D isoform X1.
    
 
 0.750
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.