Mrpl40 protein (mouse) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Mrpl40

39S ribosomal protein L40, mitochondrial. (206 aa)

Predicted Functional Partners:

Mrpl46

0.997

Mrpl36

0.995

Mrpl19

0.995

Mrpl30

0.994

Mrpl49

0.993

Mrpl32

0.993

Dap3

0.992

Mrps10

0.992

Mrpl16

0.992

Mrpl13

0.992

Your Current Organism:

Mus musculus

NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dap3	Mrpl13	ENSMUSP00000088456	ENSMUSP00000130722	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	0.983
Dap3	Mrpl16	ENSMUSP00000088456	ENSMUSP00000128915	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	39S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family.	0.987
Dap3	Mrpl19	ENSMUSP00000088456	ENSMUSP00000032124	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	39S ribosomal protein L19, mitochondrial; Belongs to the bacterial ribosomal protein bL19 family.	0.990
Dap3	Mrpl30	ENSMUSP00000088456	ENSMUSP00000027256	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	39S ribosomal protein L30, mitochondrial; Belongs to the universal ribosomal protein uL30 family.	0.984
Dap3	Mrpl32	ENSMUSP00000088456	ENSMUSP00000152345	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	39S ribosomal protein L32, mitochondrial; Belongs to the bacterial ribosomal protein bL32 family.	0.976
Dap3	Mrpl36	ENSMUSP00000088456	ENSMUSP00000022098	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	39S ribosomal protein L36, mitochondrial; Belongs to the bacterial ribosomal protein bL36 family.	0.980
Dap3	Mrpl40	ENSMUSP00000088456	ENSMUSP00000023391	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	39S ribosomal protein L40, mitochondrial.	0.992
Dap3	Mrpl46	ENSMUSP00000088456	ENSMUSP00000032841	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	39S ribosomal protein L46, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL46 family.	0.986
Dap3	Mrpl49	ENSMUSP00000088456	ENSMUSP00000007482	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	39S ribosomal protein L49, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL49 family.	0.994
Dap3	Mrps10	ENSMUSP00000088456	ENSMUSP00000113343	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	28S ribosomal protein S10, mitochondrial; Belongs to the universal ribosomal protein uS10 family.	0.999
Mrpl13	Dap3	ENSMUSP00000130722	ENSMUSP00000088456	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	28S ribosomal protein S29, mitochondrial; Involved in mediating interferon-gamma-induced cell death. Belongs to the mitochondrion-specific ribosomal protein mS29 family.	0.983
Mrpl13	Mrpl16	ENSMUSP00000130722	ENSMUSP00000128915	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	39S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family.	0.995
Mrpl13	Mrpl19	ENSMUSP00000130722	ENSMUSP00000032124	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	39S ribosomal protein L19, mitochondrial; Belongs to the bacterial ribosomal protein bL19 family.	0.996
Mrpl13	Mrpl30	ENSMUSP00000130722	ENSMUSP00000027256	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	39S ribosomal protein L30, mitochondrial; Belongs to the universal ribosomal protein uL30 family.	0.992
Mrpl13	Mrpl32	ENSMUSP00000130722	ENSMUSP00000152345	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	39S ribosomal protein L32, mitochondrial; Belongs to the bacterial ribosomal protein bL32 family.	0.994
Mrpl13	Mrpl36	ENSMUSP00000130722	ENSMUSP00000022098	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	39S ribosomal protein L36, mitochondrial; Belongs to the bacterial ribosomal protein bL36 family.	0.997
Mrpl13	Mrpl40	ENSMUSP00000130722	ENSMUSP00000023391	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	39S ribosomal protein L40, mitochondrial.	0.992
Mrpl13	Mrpl46	ENSMUSP00000130722	ENSMUSP00000032841	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	39S ribosomal protein L46, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL46 family.	0.988
Mrpl13	Mrpl49	ENSMUSP00000130722	ENSMUSP00000007482	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	39S ribosomal protein L49, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL49 family.	0.981
Mrpl13	Mrps10	ENSMUSP00000130722	ENSMUSP00000113343	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	28S ribosomal protein S10, mitochondrial; Belongs to the universal ribosomal protein uS10 family.	0.991