Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
1700016D06Rik | Acrv1 | ENSMUSP00000033906 | ENSMUSP00000034620 | RIKEN cDNA 1700016D06 gene. | Acrosomal protein SP-10. | 0.740 |
4930519G04Rik | Acrv1 | ENSMUSP00000031547 | ENSMUSP00000034620 | RIKEN cDNA 4930519G04 gene. | Acrosomal protein SP-10. | 0.768 |
Acrv1 | 1700016D06Rik | ENSMUSP00000034620 | ENSMUSP00000033906 | Acrosomal protein SP-10. | RIKEN cDNA 1700016D06 gene. | 0.740 |
Acrv1 | 4930519G04Rik | ENSMUSP00000034620 | ENSMUSP00000031547 | Acrosomal protein SP-10. | RIKEN cDNA 4930519G04 gene. | 0.768 |
Acrv1 | Akap4 | ENSMUSP00000034620 | ENSMUSP00000050962 | Acrosomal protein SP-10. | A-kinase anchor protein 4; Major structural component of sperm fibrous sheath. Plays a role in sperm motility. | 0.598 |
Acrv1 | Mbd3l2 | ENSMUSP00000034620 | ENSMUSP00000149130 | Acrosomal protein SP-10. | Methyl-CpG-binding domain protein 3-like 2. | 0.762 |
Acrv1 | Pate11 | ENSMUSP00000034620 | ENSMUSP00000129404 | Acrosomal protein SP-10. | Secreted TFP/Ly-6/uPAR protein PATE-P. | 0.608 |
Acrv1 | Pate3 | ENSMUSP00000034620 | ENSMUSP00000136668 | Acrosomal protein SP-10. | Prostate and testis expressed protein 3. | 0.601 |
Acrv1 | Pate7 | ENSMUSP00000034620 | ENSMUSP00000129553 | Acrosomal protein SP-10. | Prostate and testis-expressed 7. | 0.618 |
Acrv1 | Sp9 | ENSMUSP00000034620 | ENSMUSP00000088322 | Acrosomal protein SP-10. | Transcription factor Sp9; Transcription factor which plays a key role in limb development. Positively regulates FGF8 expression in the apical ectodermal ridge (AER) and contributes to limb outgrowth in embryos. | 0.691 |
Acrv1 | Tnp1 | ENSMUSP00000034620 | ENSMUSP00000027374 | Acrosomal protein SP-10. | Spermatid nuclear transition protein 1; Plays a key role in the replacement of histones to protamine in the elongating spermatids of mammals. In condensing spermatids, loaded onto the nucleosomes, where it promotes the recruitment and processing of protamines, which are responsible for histone eviction. The histone H2AB1-H2BC1/TH2B dimer is required for loading of TNP1 onto chromatin. | 0.650 |
Acrv1 | Zpbp | ENSMUSP00000034620 | ENSMUSP00000020413 | Acrosomal protein SP-10. | Zona pellucida-binding protein 1; Plays a role in acrosome compaction and sperm morphogenesis. Is implicated in sperm-oocyte interaction during fertilization. Belongs to the zona pellucida-binding protein Sp38 family. | 0.587 |
Akap4 | Acrv1 | ENSMUSP00000050962 | ENSMUSP00000034620 | A-kinase anchor protein 4; Major structural component of sperm fibrous sheath. Plays a role in sperm motility. | Acrosomal protein SP-10. | 0.598 |
Akap4 | Tnp1 | ENSMUSP00000050962 | ENSMUSP00000027374 | A-kinase anchor protein 4; Major structural component of sperm fibrous sheath. Plays a role in sperm motility. | Spermatid nuclear transition protein 1; Plays a key role in the replacement of histones to protamine in the elongating spermatids of mammals. In condensing spermatids, loaded onto the nucleosomes, where it promotes the recruitment and processing of protamines, which are responsible for histone eviction. The histone H2AB1-H2BC1/TH2B dimer is required for loading of TNP1 onto chromatin. | 0.720 |
Akap4 | Zpbp | ENSMUSP00000050962 | ENSMUSP00000020413 | A-kinase anchor protein 4; Major structural component of sperm fibrous sheath. Plays a role in sperm motility. | Zona pellucida-binding protein 1; Plays a role in acrosome compaction and sperm morphogenesis. Is implicated in sperm-oocyte interaction during fertilization. Belongs to the zona pellucida-binding protein Sp38 family. | 0.508 |
Mbd3l2 | Acrv1 | ENSMUSP00000149130 | ENSMUSP00000034620 | Methyl-CpG-binding domain protein 3-like 2. | Acrosomal protein SP-10. | 0.762 |
Pate11 | Acrv1 | ENSMUSP00000129404 | ENSMUSP00000034620 | Secreted TFP/Ly-6/uPAR protein PATE-P. | Acrosomal protein SP-10. | 0.608 |
Pate11 | Pate3 | ENSMUSP00000129404 | ENSMUSP00000136668 | Secreted TFP/Ly-6/uPAR protein PATE-P. | Prostate and testis expressed protein 3. | 0.784 |
Pate11 | Pate7 | ENSMUSP00000129404 | ENSMUSP00000129553 | Secreted TFP/Ly-6/uPAR protein PATE-P. | Prostate and testis-expressed 7. | 0.793 |
Pate3 | Acrv1 | ENSMUSP00000136668 | ENSMUSP00000034620 | Prostate and testis expressed protein 3. | Acrosomal protein SP-10. | 0.601 |
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