STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zmat4Zinc finger matrin-type protein 4. (229 aa)    
Predicted Functional Partners:
Fam110a
Protein FAM110A; Belongs to the FAM110 family.
      
 0.599
Itprid1
Protein ITPRID1.
      
 0.595
Dennd5b
DENN domain-containing protein 5B; Guanine nucleotide exchange factor (GEF) which may activate RAB39A and/or RAB39B. Promotes the exchange of GDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form (By similarity); Belongs to the RAB6IP1 family.
   
  
 0.580
Tm2d2
TM2 domain-containing protein 2.
      
 0.574
Ushbp1
Usher syndrome type-1C protein-binding protein 1.
   
  
 0.567
Zfp941
Zinc finger protein 941.
   
  
 0.531
Dzank1
Double zinc ribbon and ankyrin repeat-containing protein 1.
   
  
 0.514
Plekha2
Pleckstrin homology domain-containing family A member 2; Binds specifically to phosphatidylinositol 3,4-diphosphate (PtdIns3,4P2), but not to other phosphoinositides. May recruit other proteins to the plasma membrane.
      
 0.494
Zfp618
Zinc finger protein 618; May be involved in transcriptional regulation.
      
 0.484
Rnft2
RING finger and transmembrane domain-containing protein 2.
   
  
 0.483
Your Current Organism:
Mus musculus
NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice
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