Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ankrd39 | Pcdh20 | ENSMUSP00000001172 | ENSMUSP00000054774 | Ankyrin repeat domain-containing protein 39; Belongs to the ANKRD39 family. | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | 0.446 |
Bricd5 | Pcdh20 | ENSMUSP00000059792 | ENSMUSP00000054774 | BRICHOS domain containing 5. | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | 0.493 |
Cenpa | Pcdh20 | ENSMUSP00000122831 | ENSMUSP00000054774 | Histone H3-like centromeric protein A; Histone H3-like nucleosomal protein that is specifically found in centromeric nucleosomes. Replaces conventional H3 in the nucleosome core of centromeric chromatin at the inner plate of the kinetochore. The presence of CENPA subtly modifies the nucleosome structure and the way DNA is wrapped around the nucleosome and gives rise to protruding DNA ends that are less well-ordered and rigid compared to nucleosomes containing histone H3. May serve as an epigenetic mark that propagates centromere identity through replication and cell division (By simila [...] | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | 0.527 |
Chodl | Pcdh20 | ENSMUSP00000023568 | ENSMUSP00000054774 | Chondrolectin; May play a role in the development of the nervous system such as in neurite outgrowth and elongation. May be involved in motor axon growth and guidance (By similarity). | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | 0.505 |
Gm37013 | Pcdh20 | ENSMUSP00000141847 | ENSMUSP00000054774 | Predicted gene, 37013. | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | 0.672 |
Gm37013 | Pcdh9 | ENSMUSP00000141847 | ENSMUSP00000141396 | Predicted gene, 37013. | Protocadherin 9. | 0.655 |
Pcdh20 | Ankrd39 | ENSMUSP00000054774 | ENSMUSP00000001172 | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | Ankyrin repeat domain-containing protein 39; Belongs to the ANKRD39 family. | 0.446 |
Pcdh20 | Bricd5 | ENSMUSP00000054774 | ENSMUSP00000059792 | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | BRICHOS domain containing 5. | 0.493 |
Pcdh20 | Cenpa | ENSMUSP00000054774 | ENSMUSP00000122831 | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | Histone H3-like centromeric protein A; Histone H3-like nucleosomal protein that is specifically found in centromeric nucleosomes. Replaces conventional H3 in the nucleosome core of centromeric chromatin at the inner plate of the kinetochore. The presence of CENPA subtly modifies the nucleosome structure and the way DNA is wrapped around the nucleosome and gives rise to protruding DNA ends that are less well-ordered and rigid compared to nucleosomes containing histone H3. May serve as an epigenetic mark that propagates centromere identity through replication and cell division (By simila [...] | 0.527 |
Pcdh20 | Chodl | ENSMUSP00000054774 | ENSMUSP00000023568 | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | Chondrolectin; May play a role in the development of the nervous system such as in neurite outgrowth and elongation. May be involved in motor axon growth and guidance (By similarity). | 0.505 |
Pcdh20 | Gm37013 | ENSMUSP00000054774 | ENSMUSP00000141847 | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | Predicted gene, 37013. | 0.672 |
Pcdh20 | Pcdh9 | ENSMUSP00000054774 | ENSMUSP00000141396 | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | Protocadherin 9. | 0.428 |
Pcdh20 | Slc28a3 | ENSMUSP00000054774 | ENSMUSP00000022036 | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | Solute carrier family 28 member 3; Sodium-dependent, pyrimidine- and purine-selective. Involved in the homeostasis of endogenous nucleosides. Exhibits the transport characteristics of the nucleoside transport system cib or N3 subtype (N3/cib) (with marked transport of both thymidine and inosine). Employs a 2:1 sodium/nucleoside ratio. Also able to transport gemcitabine, 3'- azido-3'-deoxythymidine (AZT), ribavirin and 3-deazauridine (By similarity); Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. | 0.453 |
Pcdh20 | Triobp | ENSMUSP00000054774 | ENSMUSP00000105312 | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | TRIO and F-actin-binding protein; May regulate actin cytoskeletal organization, cell spreading and cell contraction by directly binding and stabilizing filamentous F- actin. The localized formation of TARA and TRIO complexes coordinates the amount of F-actin present in stress fibers. May also serve as a linker protein to recruit proteins required for F-actin formation and turnover. | 0.406 |
Pcdh20 | Vwa5b1 | ENSMUSP00000054774 | ENSMUSP00000030533 | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | Von Willebrand factor A domain-containing protein 5B1. | 0.417 |
Pcdh20 | Zfp957 | ENSMUSP00000054774 | ENSMUSP00000124930 | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | Zinc finger protein 957. | 0.492 |
Pcdh9 | Gm37013 | ENSMUSP00000141396 | ENSMUSP00000141847 | Protocadherin 9. | Predicted gene, 37013. | 0.655 |
Pcdh9 | Pcdh20 | ENSMUSP00000141396 | ENSMUSP00000054774 | Protocadherin 9. | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | 0.428 |
Pcdh9 | Zfp957 | ENSMUSP00000141396 | ENSMUSP00000124930 | Protocadherin 9. | Zinc finger protein 957. | 0.407 |
Slc28a3 | Pcdh20 | ENSMUSP00000022036 | ENSMUSP00000054774 | Solute carrier family 28 member 3; Sodium-dependent, pyrimidine- and purine-selective. Involved in the homeostasis of endogenous nucleosides. Exhibits the transport characteristics of the nucleoside transport system cib or N3 subtype (N3/cib) (with marked transport of both thymidine and inosine). Employs a 2:1 sodium/nucleoside ratio. Also able to transport gemcitabine, 3'- azido-3'-deoxythymidine (AZT), ribavirin and 3-deazauridine (By similarity); Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. | Protocadherin-20; Potential calcium-dependent cell-adhesion protein. | 0.453 |
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