Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cbwd1 | Foxd4 | ENSMUSP00000025815 | ENSMUSP00000058575 | COBW domain-containing protein 1. | Forkhead box protein D4. | 0.442 |
Dbf4 | Foxd4 | ENSMUSP00000132906 | ENSMUSP00000058575 | Protein DBF4 homolog A; Regulatory subunit for CDC7 which activates its kinase activity thereby playing a central role DNA in replication and cell proliferation. Required for progression of S phase. The complex CDC7- DBF4A selectively phosphorylates MCM2 subunit at 'Ser-40' and 'Ser-53' and then is involved in regulating the initiation of DNA replication during cell cycle. | Forkhead box protein D4. | 0.577 |
Ecm2 | Foxd4 | ENSMUSP00000060402 | ENSMUSP00000058575 | Extracellular matrix protein 2; Promotes matrix assembly and cell adhesiveness. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. | Forkhead box protein D4. | 0.451 |
Foxc1 | Foxd4 | ENSMUSP00000052196 | ENSMUSP00000058575 | Forkhead box protein C1; DNA-binding transcriptional factor that plays a role in a broad range of cellular and developmental processes such as eye, bones, cardiovascular, kidney and skin development. Acts either as a transcriptional activator or repressor. Binds to the consensus binding site 5'-[G/C][A/T]AAA[T/C]AA[A/C]-3' in promoter of target genes. Upon DNA-binding, promotes DNA bending. Acts as a transcriptional coactivator. Stimulates Indian hedgehog (Ihh)-induced target gene expression mediated by the transcription factor GLI2, and hence regulates endochondral ossification. Acts [...] | Forkhead box protein D4. | 0.487 |
Foxd4 | Cbwd1 | ENSMUSP00000058575 | ENSMUSP00000025815 | Forkhead box protein D4. | COBW domain-containing protein 1. | 0.442 |
Foxd4 | Dbf4 | ENSMUSP00000058575 | ENSMUSP00000132906 | Forkhead box protein D4. | Protein DBF4 homolog A; Regulatory subunit for CDC7 which activates its kinase activity thereby playing a central role DNA in replication and cell proliferation. Required for progression of S phase. The complex CDC7- DBF4A selectively phosphorylates MCM2 subunit at 'Ser-40' and 'Ser-53' and then is involved in regulating the initiation of DNA replication during cell cycle. | 0.577 |
Foxd4 | Ecm2 | ENSMUSP00000058575 | ENSMUSP00000060402 | Forkhead box protein D4. | Extracellular matrix protein 2; Promotes matrix assembly and cell adhesiveness. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. | 0.451 |
Foxd4 | Foxc1 | ENSMUSP00000058575 | ENSMUSP00000052196 | Forkhead box protein D4. | Forkhead box protein C1; DNA-binding transcriptional factor that plays a role in a broad range of cellular and developmental processes such as eye, bones, cardiovascular, kidney and skin development. Acts either as a transcriptional activator or repressor. Binds to the consensus binding site 5'-[G/C][A/T]AAA[T/C]AA[A/C]-3' in promoter of target genes. Upon DNA-binding, promotes DNA bending. Acts as a transcriptional coactivator. Stimulates Indian hedgehog (Ihh)-induced target gene expression mediated by the transcription factor GLI2, and hence regulates endochondral ossification. Acts [...] | 0.487 |
Foxd4 | Foxr1 | ENSMUSP00000058575 | ENSMUSP00000096436 | Forkhead box protein D4. | Forkhead box protein R1. | 0.459 |
Foxd4 | Olfr399 | ENSMUSP00000058575 | ENSMUSP00000149917 | Forkhead box protein D4. | Olfactory receptor. | 0.405 |
Foxd4 | Swi5 | ENSMUSP00000058575 | ENSMUSP00000109027 | Forkhead box protein D4. | DNA repair protein SWI5 homolog; Component of the SWI5-SFR1 complex, a complex required for double-strand break repair via homologous recombination. Belongs to the SWI5/SAE3 family. | 0.602 |
Foxr1 | Foxd4 | ENSMUSP00000096436 | ENSMUSP00000058575 | Forkhead box protein R1. | Forkhead box protein D4. | 0.459 |
Olfr399 | Foxd4 | ENSMUSP00000149917 | ENSMUSP00000058575 | Olfactory receptor. | Forkhead box protein D4. | 0.405 |
Swi5 | Foxd4 | ENSMUSP00000109027 | ENSMUSP00000058575 | DNA repair protein SWI5 homolog; Component of the SWI5-SFR1 complex, a complex required for double-strand break repair via homologous recombination. Belongs to the SWI5/SAE3 family. | Forkhead box protein D4. | 0.602 |