STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rtl3Retrotransposon Gag-like protein 3; May function as a transcriptional regulator (Probable). Plays a role in postnatal myogenesis, may be involved in the regulation of satellite cells self-renewal. (553 aa)    
Predicted Functional Partners:
Rtl6
Retrotransposon Gag-like protein 6.
      
 0.714
Rtl9
Retrotransposon Gag-like protein 9.
   
  
 0.709
Fancm
Fanconi anemia group M protein homolog; DNA-dependent ATPase component of the Fanconi anemia (FA) core complex. Required for the normal activation of the FA pathway, leading to monoubiquitination of the FANCI-FANCD2 complex in response to DNA damage, cellular resistance to DNA cross-linking drugs, and prevention of chromosomal breakage. In complex with CENPS and CENPX, binds double-stranded DNA (dsDNA), fork-structured DNA (fsDNA) and Holliday junction substrates. Its ATP-dependent DNA branch migration activity can process branched DNA structures such as a movable replication fork. Thi [...]
    
 
 0.679
Pnma5
Paraneoplastic antigen-like protein 5.
      
 0.592
Pnma3
Paraneoplastic antigen Ma3 homolog; Belongs to the PNMA family.
   
  
 0.548
Ldoc1
Protein LDOC1; May have an important role in the development and/or progression of some cancers.
  
   
 0.537
Pnmal1
Paraneoplastic antigen-like protein 8A; Belongs to the PNMA family.
      
 0.509
Tmem217
Transmembrane protein 217.
      
 0.456
Rtl8a
Retrotransposon Gag like 8A.
      
 0.454
Gm17657
Predicted gene, 17657.
      
 0.449
Your Current Organism:
Mus musculus
NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice
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