STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rbm33RNA-binding protein 33. (1231 aa)    
Predicted Functional Partners:
Nom1
Nucleolar MIF4G domain-containing protein 1; Plays a role in targeting PPP1CA to the nucleolus.
   
  
 0.717
Rnf32
RING finger protein 32; May play a role in sperm formation.
   
  
 0.711
Fam83c
Protein FAM83C; May play a role in MAPK signaling. Belongs to the FAM83 family.
      
 0.671
Asphd2
Aspartate beta-hydroxylase domain-containing protein 2; May function as 2-oxoglutarate-dependent dioxygenase.
      
 0.671
Pgbd5
PiggyBac transposable element-derived protein 5; Transposase that mediates sequence-specific genomic rearrangements.
   
 
 0.616
Fggy
FGGY carbohydrate kinase domain-containing protein.
   
 
 0.585
Usp24
Ubiquitin carboxyl-terminal hydrolase 24; Protease that can remove conjugated ubiquitin from target proteins and polyubiquitin chains. Deubiquitinates DDB2, preventing its proteasomal degradation (By similarity).
   
 
 0.559
Atxn2l
Ataxin-2-like protein; Involved in the regulation of stress granule and P-body formation.
   
  
 0.503
Ddx50
ATP-dependent RNA helicase DDX50.
   
  
 0.491
Cnpy1
Protein canopy homolog 1.
      
 0.491
Your Current Organism:
Mus musculus
NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice
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