Usp17la protein (mouse) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mus musculus

NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AF067061	Gm13057	ENSMUSP00000136309	ENSMUSP00000101402	cDNA sequence AF067061.	Predicted gene 13040.	0.724
AF067061	Gm13871	ENSMUSP00000136309	ENSMUSP00000102940	cDNA sequence AF067061.	Predicted gene, OTTMUSG00000014862.	0.723
AF067061	Gm428	ENSMUSP00000136309	ENSMUSP00000081515	cDNA sequence AF067061.	Predicted gene 428.	0.681
AF067061	Tcstv1	ENSMUSP00000136309	ENSMUSP00000137348	cDNA sequence AF067061.	2-cell-stage, variable group, member 1.	0.436
AF067061	Usp17la	ENSMUSP00000136309	ENSMUSP00000068997	cDNA sequence AF067061.	Ubiquitin carboxyl-terminal hydrolase 17-like protein A; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Has deubiquitinating enzyme activity for DNAH5, suggesting a role in the regulation of DNAH5 degradation by the ubiquitin-proteasome pathway. Has growth-suppressing activity; induces arrest in G1 phase upon controlled expression.	0.569
AF067061	Zfp352	ENSMUSP00000136309	ENSMUSP00000102746	cDNA sequence AF067061.	Zinc finger protein 352.	0.468
Gm13057	AF067061	ENSMUSP00000101402	ENSMUSP00000136309	Predicted gene 13040.	cDNA sequence AF067061.	0.724
Gm13057	Gm13871	ENSMUSP00000101402	ENSMUSP00000102940	Predicted gene 13040.	Predicted gene, OTTMUSG00000014862.	0.839
Gm13057	Gm428	ENSMUSP00000101402	ENSMUSP00000081515	Predicted gene 13040.	Predicted gene 428.	0.710
Gm13057	Gm4340	ENSMUSP00000101402	ENSMUSP00000137824	Predicted gene 13040.	Predicted gene 4340.	0.528
Gm13057	Tcstv1	ENSMUSP00000101402	ENSMUSP00000137348	Predicted gene 13040.	2-cell-stage, variable group, member 1.	0.577
Gm13057	Usp17la	ENSMUSP00000101402	ENSMUSP00000068997	Predicted gene 13040.	Ubiquitin carboxyl-terminal hydrolase 17-like protein A; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Has deubiquitinating enzyme activity for DNAH5, suggesting a role in the regulation of DNAH5 degradation by the ubiquitin-proteasome pathway. Has growth-suppressing activity; induces arrest in G1 phase upon controlled expression.	0.611
Gm13057	Zfp352	ENSMUSP00000101402	ENSMUSP00000102746	Predicted gene 13040.	Zinc finger protein 352.	0.500
Gm13871	AF067061	ENSMUSP00000102940	ENSMUSP00000136309	Predicted gene, OTTMUSG00000014862.	cDNA sequence AF067061.	0.723
Gm13871	Gm13057	ENSMUSP00000102940	ENSMUSP00000101402	Predicted gene, OTTMUSG00000014862.	Predicted gene 13040.	0.839
Gm13871	Gm4340	ENSMUSP00000102940	ENSMUSP00000137824	Predicted gene, OTTMUSG00000014862.	Predicted gene 4340.	0.547
Gm13871	Tcstv1	ENSMUSP00000102940	ENSMUSP00000137348	Predicted gene, OTTMUSG00000014862.	2-cell-stage, variable group, member 1.	0.582
Gm13871	Usp17la	ENSMUSP00000102940	ENSMUSP00000068997	Predicted gene, OTTMUSG00000014862.	Ubiquitin carboxyl-terminal hydrolase 17-like protein A; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Has deubiquitinating enzyme activity for DNAH5, suggesting a role in the regulation of DNAH5 degradation by the ubiquitin-proteasome pathway. Has growth-suppressing activity; induces arrest in G1 phase upon controlled expression.	0.610
Gm13871	Zfp352	ENSMUSP00000102940	ENSMUSP00000102746	Predicted gene, OTTMUSG00000014862.	Zinc finger protein 352.	0.511
Gm428	AF067061	ENSMUSP00000081515	ENSMUSP00000136309	Predicted gene 428.	cDNA sequence AF067061.	0.681