STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gm13088Predicted gene 13088. (460 aa)    
Predicted Functional Partners:
Fau
Ubiquitin-like protein FUBI; Belongs to the ubiquitin family.
   
 
 0.911
Pramef20
PRAME family member 20.
  
 
 
0.762
Gm12794
Predicted gene 12794.
  
 
 
0.761
Gm3259
Predicted gene 3259.
  
 
 
0.759
Gm13078
Predicted gene 13078.
  
 
 
0.758
C87414
Expressed sequence C87414.
  
 
 
0.757
Pramef25
PRAME family member 25.
  
 
 
0.756
Gm13101
Predicted gene 13101.
  
 
 
0.754
BC080695
cDNA sequence BC080695.
  
 
 
0.754
C87499
Expressed sequence C87499.
  
 
 
0.753
Your Current Organism:
Mus musculus
NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.