STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmco2Transmembrane and coiled-coil domain-containing protein 2. (187 aa)    
Predicted Functional Partners:
Tmco5
Transmembrane and coiled-coil domain-containing protein 5A; Belongs to the TMCO5 family.
   
  
 0.680
Ccdc54
Coiled-coil domain-containing protein 54.
   
  
 0.675
Ccdc187
Coiled-coil domain-containing protein 187.
   
  
 0.650
Trit1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
      
 0.590
Fam81b
Family with sequence similarity 81, member B.
      
 0.577
Fam71f1
Protein FAM71F1; Belongs to the FAM71 family.
   
  
 0.570
Cabs1
Calcium-binding and spermatid-specific protein 1.
   
  
 0.561
Galntl5
Inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5; Probable inactive glycosyltransferase required during spermatid development. May participate in protein loading into the acrosomes and accumulation of ubiquitin-proteasome systems around the head-tail coupling apparatus region; Belongs to the glycosyltransferase 2 family. GalNAc-T subfamily.
   
  
 0.561
Cfap206
Cilia- and flagella-associated protein 206; May regulate cilium motility through its role in the assembly of the axonemal radial spokes.
   
  
 0.551
Pih1d2
PIH1 domain-containing protein 2.
      
 0.539
Your Current Organism:
Mus musculus
NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice
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