Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B020004J07Rik | Usp17la | ENSMUSP00000102532 | ENSMUSP00000068997 | RIKEN cDNA B020004J07 gene. | Ubiquitin carboxyl-terminal hydrolase 17-like protein A; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Has deubiquitinating enzyme activity for DNAH5, suggesting a role in the regulation of DNAH5 degradation by the ubiquitin-proteasome pathway. Has growth-suppressing activity; induces arrest in G1 phase upon controlled expression. | 0.519 |
B020004J07Rik | Zfp352 | ENSMUSP00000102532 | ENSMUSP00000102746 | RIKEN cDNA B020004J07 gene. | Zinc finger protein 352. | 0.736 |
B020004J07Rik | Zscan4c | ENSMUSP00000102532 | ENSMUSP00000118506 | RIKEN cDNA B020004J07 gene. | Zinc finger and SCAN domain containing protein 4C; Embryonic stem (ES) cell-specific transcription factor required to regulate ES cell pluripotency. Binds telomeres and plays a key role in genomic stability in ES cells by regulating telomere elongation. Acts as an activator of spontaneous telomere sister chromatid exchange (T-SCE) and telomere elongation in undifferentiated ES cells. | 0.544 |
Gm4027 | Tcstv1 | ENSMUSP00000132993 | ENSMUSP00000137348 | Predicted gene 4027. | 2-cell-stage, variable group, member 1. | 0.415 |
Gm4027 | Tcstv3 | ENSMUSP00000132993 | ENSMUSP00000153496 | Predicted gene 4027. | 2-cell-stage, variable group, member 3. | 0.676 |
Gm4027 | Tdpoz1 | ENSMUSP00000132993 | ENSMUSP00000138008 | Predicted gene 4027. | TD and POZ domain-containing protein 1. | 0.715 |
Gm4027 | Zfp352 | ENSMUSP00000132993 | ENSMUSP00000102746 | Predicted gene 4027. | Zinc finger protein 352. | 0.718 |
Gm4027 | Zscan4c | ENSMUSP00000132993 | ENSMUSP00000118506 | Predicted gene 4027. | Zinc finger and SCAN domain containing protein 4C; Embryonic stem (ES) cell-specific transcription factor required to regulate ES cell pluripotency. Binds telomeres and plays a key role in genomic stability in ES cells by regulating telomere elongation. Acts as an activator of spontaneous telomere sister chromatid exchange (T-SCE) and telomere elongation in undifferentiated ES cells. | 0.539 |
Gm4027 | Zscan4f | ENSMUSP00000132993 | ENSMUSP00000120149 | Predicted gene 4027. | Zinc finger and SCAN domain containing protein 4F; Transcription factor required to regulate early development. Binds telomeres and plays a key role in genomic stability by regulating telomere elongation. Acts as an activator of spontaneous telomere sister chromatid exchange (T-SCE) and telomere elongation (By similarity). | 0.642 |
Gm4340 | Tcstv1 | ENSMUSP00000137824 | ENSMUSP00000137348 | Predicted gene 4340. | 2-cell-stage, variable group, member 1. | 0.717 |
Gm4340 | Tcstv3 | ENSMUSP00000137824 | ENSMUSP00000153496 | Predicted gene 4340. | 2-cell-stage, variable group, member 3. | 0.521 |
Gm4340 | Tdpoz1 | ENSMUSP00000137824 | ENSMUSP00000138008 | Predicted gene 4340. | TD and POZ domain-containing protein 1. | 0.645 |
Gm4340 | Usp17la | ENSMUSP00000137824 | ENSMUSP00000068997 | Predicted gene 4340. | Ubiquitin carboxyl-terminal hydrolase 17-like protein A; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Has deubiquitinating enzyme activity for DNAH5, suggesting a role in the regulation of DNAH5 degradation by the ubiquitin-proteasome pathway. Has growth-suppressing activity; induces arrest in G1 phase upon controlled expression. | 0.651 |
Gm4340 | Zfp352 | ENSMUSP00000137824 | ENSMUSP00000102746 | Predicted gene 4340. | Zinc finger protein 352. | 0.698 |
Gm4340 | Zscan4c | ENSMUSP00000137824 | ENSMUSP00000118506 | Predicted gene 4340. | Zinc finger and SCAN domain containing protein 4C; Embryonic stem (ES) cell-specific transcription factor required to regulate ES cell pluripotency. Binds telomeres and plays a key role in genomic stability in ES cells by regulating telomere elongation. Acts as an activator of spontaneous telomere sister chromatid exchange (T-SCE) and telomere elongation in undifferentiated ES cells. | 0.611 |
Gm4340 | Zscan4d | ENSMUSP00000137824 | ENSMUSP00000066504 | Predicted gene 4340. | Zinc finger and SCAN domain containing protein 4D; Transcription factor required to regulate early development. Binds telomeres and plays a key role in genomic stability by regulating telomere elongation. Acts as an activator of spontaneous telomere sister chromatid exchange (T-SCE) and telomere elongation (By similarity). | 0.442 |
Tcstv1 | Gm4027 | ENSMUSP00000137348 | ENSMUSP00000132993 | 2-cell-stage, variable group, member 1. | Predicted gene 4027. | 0.415 |
Tcstv1 | Gm4340 | ENSMUSP00000137348 | ENSMUSP00000137824 | 2-cell-stage, variable group, member 1. | Predicted gene 4340. | 0.717 |
Tcstv1 | Tcstv3 | ENSMUSP00000137348 | ENSMUSP00000153496 | 2-cell-stage, variable group, member 1. | 2-cell-stage, variable group, member 3. | 0.497 |
Tcstv1 | Tdpoz1 | ENSMUSP00000137348 | ENSMUSP00000138008 | 2-cell-stage, variable group, member 1. | TD and POZ domain-containing protein 1. | 0.570 |
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