STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gm1140Predicted gene 1140. (229 aa)    
Predicted Functional Partners:
Gm14692
Predicted gene 14692.
  
   
0.873
1700020N15Rik
RIKEN cDNA 1700020N15 gene.
      
 0.841
4930447F04Rik
RIKEN cDNA 4930447F04 gene.
      
 0.794
4933436I01Rik
RIKEN cDNA 4933436I01 gene.
      
 0.780
Gm6812
Predicted gene 6812.
      
 0.769
Ctag2
Cancer/testis antigen 2.
      
 0.692
Fmr1nb
Fragile X mental retardation 1 neighbor protein.
   
  
 0.650
Gm773
Gene model 773, (NCBI).
  
    0.538
Xlr
X-linked lymphocyte-regulated protein PM1.
  
     0.536
Xlr3b
X-linked lymphocyte-regulated protein 3B; Belongs to the XLR/SYCP3 family.
  
     0.520
Your Current Organism:
Mus musculus
NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.