STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usf2Upstream stimulatory factor 2. (339 aa)    
Predicted Functional Partners:
Usf1
Upstream stimulatory factor 1 isoform X1.
  
 
0.983
Ep300
Histone acetyltransferase p300.
    
 0.805
Sp1
Transcription factor Sp1 isoform X1.
    
 0.607
Brca1
Breast cancer type 1 susceptibility protein isoform X1.
    
 
 0.596
Crebbp
CREB-binding protein isoform X1.
    
 0.581
Gtf2i
Transcription initiation factor TFII-I.
    
 
 0.568
Kars
Lysyl-tRNA synthetase, class II.
      
 0.501
Adamts12
A disintegrin and metalloproteinase with thrombospondin motifs 12.
    
  0.493
Ncoa2
Nuclear receptor coactivator 2 isoform X1.
    
 0.487
Ncoa3
Nuclear receptor coactivator 3.
    
 0.487
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.