STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Yif1aProtein transport protein YIF1. (293 aa)    
Predicted Functional Partners:
Yipf4
Protein YIPF4.
   
 
 0.784
Yipf7
Protein YIPF5/7.
   
 
 0.783
Yipf5
Protein YIPF5/7.
   
 
 0.709
Rabac1
Prenylated Rab acceptor protein 1.
   
 
 0.638
Selenos
Selenoprotein S.
   
 
 0.636
Vapb
Vesicle-associated membrane protein-associated protein B/C isoform X1.
    
 
 0.535
Yipf2
Protein YIPF1/2.
   
  
 0.520
Maea
Macrophage erythroblast attacher isoform X1.
   
 
 0.516
Rab1a
Ras-related protein Rab-1A isoform X1.
   
 
 0.484
Yipf3
Protein YIPF3.
   
  
 0.455
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.