STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtx4E3 ubiquitin-protein ligase DTX4. (614 aa)    
Predicted Functional Partners:
Notch1
Neurogenic locus notch homolog protein 1.
    
 0.711
Nlrp4f
NLR family, pyrin domain containing 4F.
    
 0.693
Notch2
Neurogenic locus notch homolog protein 2.
     
 0.657
Notch4
Neurogenic locus notch homolog protein 4.
     
 0.656
Notch3
LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 3.
     
 0.652
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.