STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zfyve27Protrudin isoform X1. (415 aa)    
Predicted Functional Partners:
Rab11a
Ras-related protein Rab-11A.
    
 
 0.770
Vapa
Vesicle-associated membrane protein-associated protein A.
    
 
 0.753
Pdzd8
PDZ domain-containing protein 8.
      
 0.732
Fyco1
FYVE and coiled-coil domain-containing protein 1.
      
 0.732
Vapb
Vesicle-associated membrane protein-associated protein B/C isoform X1.
    
 
 0.695
Spast
Spastin.
    
 
 0.684
Atl1
Atlastin-1 isoform X1.
    
 
 0.677
Reep1
Receptor expression-enhancing protein 1/2/3/4.
    
 
 0.673
Osbpl1a
Oxysterol-binding protein-related protein 1 isoform X1.
      
 0.666
Kif5a
Kinesin family member 5.
      
 0.651
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.