STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmp13Matrix metalloproteinase-13 (collagenase 3). (472 aa)    
Predicted Functional Partners:
Ctsk
Cathepsin K.
   
 
 0.953
Timp2
Metalloproteinase inhibitor 2.
   
 0.930
Mmp3
Matrix metalloproteinase-3 (stromelysin 1, progelatinase).
  
 
0.906
Col18a1
Collagen alpha-1(XVIII) chain isoform X1.
   
 0.858
Mmp14
Matrix metalloproteinase-14 (membrane-inserted).
  
0.851
Mmp16
Matrix metalloproteinase-16 (membrane-inserted).
  
0.842
Timp1
Metalloproteinase inhibitor 1 isoform X1.
   
 0.832
Optc
Opticin isoform X1.
    
  0.818
Timp3
Metalloproteinase inhibitor 3.
   
 0.813
Dcn
Decorin.
   
 0.791
Your Current Organism:
Mus pahari
NCBI taxonomy Id: 10093
Other names: Coelomys parahi, M. pahari, shrew mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.